GENETIC DIVERSITY AND DEMOGRAPHIC HISTORY OF DWARF HONEYBEE Apis florea FABRICIUS, 1787 POPULATIONS IN THAILAND

Authors

  • Piyamas Sopaladawan Mahasarakham University
  • Sasithon Soipijit Mahasarakham University

DOI:

https://doi.org/10.55766/sujst-2024-06-e06568

Abstract

The dwarf honeybee, Apis florea Fabricius, 1787, is native to Southeast Asia, with its primary habitats in Thailand, Pakistan, India, Sri Lanka, Myanmar, and Laos. This species plays a crucial role in pollinating a wide variety of plants and economically important crops. In this study, we examined the genetic diversity and demographic history of A. florea in Thailand using partial sequences of mitochondrial cytochrome c oxidase I (COI) gene. The analysis was conducted using samples from 59 A. florea colonies across Thailand, combined with 13 COI sequences of A. florea from various countries obtained from GenBank. Overall, low nucleotide diversity (0.00321) coupled with high haplotype diversity (0.858) were observed within the Thai populations. The low genetic variation in A. florea suggests that this species occupies a wide range of environments and maintains temporally continuous gene flow, possibly due to its reproductive season. Median-joining network analysis revealed a star-like shape, indicating recent population expansion. This finding was further supported by a unimodal mismatch distribution and significantly negative results for Tajima’s D and Fu’s Fs tests.  Demographic history analyses suggested that A. florea may have experienced a population expansion approximately 55,000-243,000 years ago.

References

Asadi, N., Rahimi, A., Ghaheri, M., Kahrizi, D., Bagheri Dehbaghi, M., Khederzadeh, S., Banabazi, M.H., Esmaeilkhanian, S., Veisi, B., Geravandi, M., Karim, H., Vaziri, S., Daneshgar, F., Zargooshi, J. (2016). Genetic diversity of the dwarf honeybee (Apis florea Fabricius, 1787) populations based on microsatellite markers. Cellular and Molecular Biology, 62(12):51-55.

Cao, L., Dai, Z., Tan, H., Zheng, H., Wang, Y., Chen, J., Kuang, H., Chong, R.A., Han, M., Hu, F., Sun, W., Sun, C., Zhang, Z. (2023). Population structure, demographic history, and adaptation of giant honeybees in China revealed by population genomic data. Genome Biology and Evolution, 15(3):evad025 https://doi.org/10.1093/gbe/evad025

Chaiyawong, T., Deowanish, S., Wongsiri, S., Sylvester, H.A., Rinderer, T.E., and de Guzman, L. (2004). Multivariate morphometric study of Apis florea in Thailand. Journal of Apicultural Research, 43:123-127. https://doi.org/10.1080/00218839.2004.11101122

Deowanish, S., Wattanachaiyingcharoen, W., Wongsiri, S., Oldroyd, B.P., Leepitakrat, S., Rinderer, T.E., and Sylvester, H.A. (2000). Biodiversity of dwarf honey bees in Thailand. In Proceedings of the 7th International Conference on Tropical Bees (pp. 97-103). Chiang Mai, Thailand.

Edgar, R.C. (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32(5):1792-1797. https://doi.org/10.1093/nar/gkh340

El-Niweiri, M.A., Moritz, R.F., and Lattorff, H.M.G. (2019). The invasion of the dwarf honeybee, Apis florea, along the River Nile in Sudan. Insects, 10(11):405. https://doi.org/10.3390/insects10110405

Excoffier, L. and Lischer, H.E.L. (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetic analyses under Linux and Windows. Molecular Ecology Resources, 10(3):564-567. https://doi.org/10.1111/j.1755-0998.2010.02847.x

Folmer, O., Black, M., Hoeh, W., Lutz, R., and Vrijenhoek, R. (1994). DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3(5):294-299.

Hepburn, H.R. and Radloff, S.E. (2011). Biogeography of the dwarf honeybees, Apis andreniformis and Apis florea. Apidologie, 42:293-300. https://doi.org/10.1007/s13592-011-0024-x

Hoang, D.T., Chernomor, O., von Haeseler, A., Minh, B.Q., and Vinh, L.S. (2018). UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution, 35(2):518-522. https://doi.org/10.1093/molbev/msx281

Huelsenbeck, J.P. and Ronquist, F.R. (2001). MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17(8):754-755. https://doi.org/10.1093/bioinformatics/17.8.754

Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K.F., von Haeseler, A., and Jermiin, L.S. (2017). ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods, 14(6):587-589. https://doi.org/10.1038/nmeth.4285

Kevan, P.G. (2021). Urban bee conservation and urban agriculture: Status, challenges, and policy perspectives. Journal of Urban Ecology, 7:1-20.

Kumar, S., Stecher, G., Li, M., Knyaz, C., and Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6):1,547-1,549. https://doi.org/10.1093/molbev/msy096

Kunprom, C. and Pramual, P. (2017). Genetic structure and demographic history of the melon fly Zeugodacus cucurbitae (Coquillet) (Diptera: Tephritidae) in Thailand. Agricultural and Forest Entomology, 20(2):180-190. https://doi.org/10.1111/afe.12242

Lazar, K.V., Fakrudin, B., Omkar Babu, K., Mohankumar, S., Parthiban, T.P., Chapalkar, S., Viraktamath, S., and Vastrad, A.S. (2013). Genetic diversity and phylogeny of Apis florea. In S. Viraktamath, B. Fakrudin, A. S. Vastrad, and S. Mohankumar (Eds.), Monograph and phylogeography of honey bees and stingless bees in India (pp. 101-123). Department of Biotechnology, Ministry of Science and Technology, Government of India.

Leigh, J.W. and Bryant, D. (2015). POPART: Full-feature software for haplotype network construction. Methods in Ecology and Evolution, 6(9):1,110-1,116. https://doi.org/10.1111/2041-210X.12410

Librado, P. and Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25(11):1,451-1,452. https://doi.org/10.1093/bioinformatics/btp187

Mendez-Harclerode, F.M., Strauss, R.E., Fulhorst, C.F., Milazzo, M.L., Ruthven III, D.C., and Bradley, R.D. (2007). Molecular evidence for high levels of intrapopulation genetic diversity in woodrats (Neotoma micropus). Journal of Mammalogy, 88(2):360-370. https://doi.org/10.1644/05-MAMM-A-377R1.1

Nagaraja, N. (2020). Biology of dwarf honeybee, Apis florea Fabricius (Hymenoptera: Apidae). In The future role of dwarf honey bees in natural and agricultural systems (pp. 13-23). CRC Press. https://doi.org/10.1201/9781003033936-2

Nanork, P. (2001). Mitochondrial DNA variability of dwarf honey bee Apis florea Fabricius, 1787 in Thailand using PCR-RFLP technique [Master's thesis, Chulalongkorn University].

Nguyen, L.T., Schmidt, T., von Haeseler, A., and Minh, B.Q. (2015). IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution, 32(1):268-274. https://doi.org/10.1093/molbev/msu300

Oldroyd, B.P. (2021). Dwarf honey bees (Apis (Micrapis)). In C. K. Starr (Ed.), Encyclopedia of social insects (pp. 333-339). Springer. https://doi.org/10.1007/978-3-030-28102-1_38

Oldroyd, B.P. and Nanork, P. (2009). Conservation of Asian honey bees. Apidologie, 40(3):296-312. https://doi.org/10.1051/apido/2009021

Papadopoulou, A., Anastasiou, I., and Vogler, A.P. (2010). Revisiting the insect mitochondrial molecular clock: The mid-Aegean trench calibration. Molecular Biology and Evolution, 27(7):1,659-1,672. https://doi.org/10.1093/molbev/msq051

Rambaut, A. (2012). FigTree: Tree figure drawing tool (Version 1.4.0) [Computer software]. Institute of Evolutionary Biology, University of Edinburgh.

Rogers, A.R. and Harpending, H. (1992). Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9(3):552-569.

Ruttner, F. (1988). Biogeography and taxonomy of honey bees. Springer-Verlag. https://doi.org/10.1007/978-3-642-72649-1

Salem, M.M., Shebll, M.A., Kamel, S.M., and El Demerdash, H.A.M. (2020). The molecular origin of the dwarf honey bee newly recorded from Egypt. Entomology and Applied Science Letters, 7(1):76-80.

Silva, D.P., Castro, A.C.F., Vilela, B., Ong, X.R., Thomas, J.C., Alqarni, S., Engel, M.S., and Ascher, J.S. (2020). Colonizing the east and the west: Distribution and niche properties of a dwarf Asian honey bee invading Africa, the Middle East, the Malay Peninsula, and Taiwan. Apidologie, 51:75-87. https://doi.org/10.1007/s13592-019-00711-x

Downloads

Published

2025-02-20

How to Cite

Sopaladawan, P., & Soipijit, S. (2025). GENETIC DIVERSITY AND DEMOGRAPHIC HISTORY OF DWARF HONEYBEE Apis florea FABRICIUS, 1787 POPULATIONS IN THAILAND . Suranaree Journal of Science and Technology, 31(6), 030245(1–8). https://doi.org/10.55766/sujst-2024-06-e06568

Issue

Section

Research Article

Categories